Make the output from umi_tools dedup or group compatible with RSEM
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM file containing reads to be deduplicated via UMIs.
*.{bam}
bai
BAM index files corresponding to the input BAM file.
*.{bai}
*.bam
Prepared BAM file.
log
*.log
File with logging information
*.{log}
versions_umitools
${task.process}
:string
The name of the process
umitools
The name of the tool
umi_tools --version | sed 's/UMI-tools version: //'
:eval
The expression to obtain the version of the tool
versions
UMI-tools contains tools for dealing with Unique Molecular Identifiers (UMIs)/Random Molecular Tags (RMTs) and single cell RNA-Seq cell barcodes
