Parses a Thermo RAW file containing mass spectra to an open file format
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
raw
:file
Thermo RAW file
*.{raw,RAW}
spectra
*.{mzML,mzML.gz,mgf,mgf.gz,parquet,parquet.gz}
Mass spectra in open format
versions_thermorawfileparser
${task.process}
:string
The process the versions were collected from
thermorawfileparser
The name of the tool
ThermoRawFileParser.sh --version
:eval
The expression to obtain the version of the tool
versions
Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono
