Calculate read duplication rate
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
the alignment in bam format
*.{bam}
bai
BAM index file
*.{bai}
seq_xls
Read duplication rate determined from mapping position of read
*seq.DupRate.xls
pos_xls
*pos.DupRate.xls
Read duplication rate determined from sequence of read
pdf
*.pdf
plot of duplication rate
rscript
*.r
script to reproduce the plot
*.R
versions_rseqc
${task.process}
:string
The process the versions were collected from
rseqc
The tool name
read_duplication.py --version | sed "s/read_duplication.py //"
:eval
The expression to obtain the version of the tool
versions
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
