Description

Filters peptide/protein identification results by different criteria.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

id_file

:file

Peptide-spectrum matches.

*.{idXML,consensusXML}

filter_file

:file

Optional idXML file to filter on/out peptides or proteins

Output

name:type
description
pattern

filtered

meta

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.{idXML,consensusXML}

:file

Filtered peptide-spectrum matches.

*.{idXML,consensusXML}

versions_openms

${task.process}

:string

The name of the process

openms

:string

The name of the tool

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

openms

:string

The name of the tool

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'

:eval

The expression to obtain the version of the tool

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses