Reformat a Multiple Sequence Alignment (MSA) file
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
aln
:file
Input MSA file
*.{fa,fasta,fas,a2m,a3m,sto,psi,clu,fa.gz,fasta.gz,fas.gz,a2m.gz,a3m.gz,sto.gz,psi.gz,clu.gz}
informat
:string
Format of the input MSA file
outformat
Format of the output MSA file
msa
${prefix}.${outformat}.gz
Gzipped reformatted output MSA file
*.{fas.gz,a2m.gz,a3m.gz,sto.gz,psi.gz,clu.gz}
versions_hhsuite
${task.process}
The name of the process
hhsuite
The name of the tool
hhblits -h 2>&1 | sed -n '1s/^HHblits \([0-9.]\+\):/\1/p'
:eval
The expression to obtain the version of the tool
versions
HH-suite3 for fast remote homology detection and deep protein annotation
