modules/gunzip

Compresses and decompresses files.

gunzipcompressiondecompression

https://github.com/nf-core/modules/[...]/modules/nf-core/gunzip

Description

Compresses and decompresses files.

Input

name:type

description

pattern

`meta`
`:map`

Optional groovy Map containing meta information e.g. [ id:‘test’, single_end:false ]

`archive`
`:file`

File to be compressed/uncompressed

*.*

Output

name:type

description

pattern

`gunzip`

`meta`
`:file`

Compressed/uncompressed file

*.*

`${gunzip}`
`:file`

Compressed/uncompressed file

*.*

`versions_gunzip`

`${task.process}`
`:string`

The process the versions were collected from

`gunzip`
`:string`

The tool name

`gunzip --version 2>&1 | head -1 | sed "s/^.(gzip) //; s/ Copyright.//"`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The process the versions were collected from

`gunzip`
`:string`

The tool name

`gunzip --version 2>&1 | head -1 | sed "s/^.(gzip) //; s/ Copyright.//"`
`:eval`

The expression to obtain the version of the tool

Tools

gunzip
GPL-3.0-or-later

gzip is a file format and a software application used for file compression and decompression.

gnu.org/software/gzip/manual/gzip

modules/gunzip

Description

Input

`meta`
`:map`

`archive`
`:file`

Output

`gunzip`

`meta`
`:file`

`${gunzip}`
`:file`

`versions_gunzip`

`${task.process}`
`:string`

`gunzip`
`:string`

`gunzip --version 2>&1 | head -1 | sed "s/^.(gzip) //; s/ Copyright.//"`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`gunzip`
`:string`

`gunzip --version 2>&1 | head -1 | sed "s/^.(gzip) //; s/ Copyright.//"`
`:eval`

Tools

gunzip
GPL-3.0-or-later

included in

maintainers

get in touch

modules/gunzip

Description

Input

meta:map

archive:file

Output

gunzip

meta:file

${gunzip}:file

versions_gunzip

${task.process}:string

gunzip:string

gunzip --version 2>&1 | head -1 | sed "s/^.*(gzip) //; s/ Copyright.*//":eval

Topics

versions

${task.process}:string

gunzip:string

gunzip --version 2>&1 | head -1 | sed "s/^.*(gzip) //; s/ Copyright.*//":eval

Tools

gunzip GPL-3.0-or-later

included in

maintainers

get in touch

`meta`
`:map`

`archive`
`:file`

`gunzip`

`meta`
`:file`

`${gunzip}`
`:file`

`versions_gunzip`

`${task.process}`
`:string`

`gunzip`
`:string`

`gunzip --version 2>&1 | head -1 | sed "s/^.(gzip) //; s/ Copyright.//"`
`:eval`

`versions`

`${task.process}`
`:string`

`gunzip`
`:string`

`gunzip --version 2>&1 | head -1 | sed "s/^.(gzip) //; s/ Copyright.//"`
`:eval`

gunzip
GPL-3.0-or-later