call variant and sequencing depth information of the variant
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
bam
:file
Sorted BAM file
*.bam
fasta
The reference sequence used for mapping and generating the BAM file
*.fa
variants
*.variants.tsv
File containing identified variants in a gff-like format
*.depth.tsv
File containing depth of the variants
versions_freyja
${task.process}
:string
The name of the process
freyja
The name of the tool
freyja --version | sed 's/.* //'
:eval
The expression to obtain the version of the tool
versions
Freyja recovers relative lineage abundances from mixed SARS-CoV-2 samples and provides functionality to analyze lineage dynamics.
