Download FASTQ files from SRA or ENA repositories.
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
accession
:string
ENA/SRA accession to query
fastq
*.fastq.gz
:file
FASTQ files downloaded from ENA or SRA
runinfo
*-run-info.tsv
Tab-delimited file containing metadata for each Run downloaded
runmergers
*-run-mergers.tsv
Tab-delimited file merge information from —group-by-experiment or —group-by-sample
versions_fastqdl
${task.process}
The name of the process
fastq-dl
The name of the tool
fastq-dl --version |& sed "s/.* //"
:eval
The expression to obtain the version of the tool
versions
A tool to download FASTQs associated with Study, Experiment, or Run accessions.
