Builds a DIAMOND database
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
Input fasta file
*.{fa,fasta,fa.gz,fasta.gz}
taxonmap
Optional mapping file of NCBI protein accession numbers to taxon ids (gzip compressed), required for taxonomy functionality.
*.gz
taxonnodes
Optional NCBI taxonomy nodes.dmp file, required for taxonomy functionality.
*.dmp
taxonnames
Optional NCBI taxonomy names.dmp file, required for taxonomy functionality.
db
*.dmnd
File of the indexed DIAMOND database
versions_diamond
${task.process}
:string
The name of the process
diamond
The name of the tool
diamond --version | sed 's/diamond version //g'
:eval
The expression to obtain the version of the tool
versions
Accelerated BLAST compatible local sequence aligner
