Call variants from the examples produced by make_examples
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
make_examples_tfrecords
:file
The actual sharded input files, from DEEPVARIANT_MAKEEXAMPLES process
*.gz
call_variants_tfrecords
:list
Each output contains: unique ID string from input channel, meta, tfrecord file with variant calls.
${prefix}.call-*-of-*.tfrecord.gz
versions_deepvariant
${task.process}
:string
The process the versions were collected from
deepvariant
The tool name
/opt/deepvariant/bin/run_deepvariant --version | sed 's/^.*version //'
:eval
The expression to obtain the version of the tool
versions
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data
