Description

Test for the presence of suitable NCBI settings or create them on the fly.

Input

name:type
description
pattern

ids

:string

List of id settings

Output

name:type
description
pattern

ncbi_settings

*.mkfg

:file

An NCBI user settings file.

*.mkfg

versions_sratools

${task.process}

:string

The name of the process

sratools

:string

The name of the tool

prefetch --version 2>&1 | grep -Eo '[0-9.]+'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

sratools

:string

The name of the tool

prefetch --version 2>&1 | grep -Eo '[0-9.]+'

:eval

The expression to obtain the version of the tool