A simple program to parse Illumina NGS data and check it for quality criteria
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
run_dir
:file
Illumina sequencing run directory Can be directory or a compressed tar (tar.gz) of the directory
checkqc_config
CheckQC configuration file
*.{yml,yaml}
report
CheckQC report in json format
*checkqc_report.json
versions_checkqc
${task.process}
:string
The name of the process
checkqc
The name of the tool
checkqc --version | sed -e "s/checkqc, version //g"
:eval
The expression to obtain the version of the tool
versions
A simple program to parse Illumina NGS data and check it for quality criteria.
