Builds bowtie index for reference genome
meta
:map
Groovy Map containing reference information e.g. [ id:‘test’, single_end:false ]
fasta
:file
Reference genome FASTA file
*.{fa,fasta,fna}
fai
Reference genome FASTA index file
*.{fai}
index
bowtie2
:directory
Bowtie2 genome index files
*.bt2
versions_bowtie2
${task.process}
:string
The name of the process
The name of the tool
bowtie2 --version 2>&1 | sed -n 's/.*bowtie2-align-s version //p'
:eval
The expression to obtain the version of the tool
versions
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
