Description

Extract OME xml data from OME-tif

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

image

:file

Path to image file containing OME metadata

Output

name:type
description
pattern

xml

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

*.xml.gz

:file

Compressed XML with OME tag metadata

versions_bftools

${task.process}

:string

The name of the process

bftools

:string

The name of the tool

showinf -version | sed -n '1s/[^ ]* //p'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

bftools

:string

The name of the tool

showinf -version | sed -n '1s/[^ ]* //p'

:eval

The expression to obtain the version of the tool

Tools