masks sequences in a FASTA file based on intervals defined in a feature file.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed
:file
Bed feature file
*.{bed}
fasta
Input fasta file
*.{fa,fasta}
*.fa
Output masked fasta file
*.{fa}
versions_bedtools
${task.process}
:string
The name of the process
bedtools
The name of the tool
bedtools --version | sed -e 's/bedtools v//g'
:eval
The expression to obtain the version of the tool
versions
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
