Re-pairs reads that became disordered or had some mates eliminated.
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
reads
:file
List of input paired end fastq files
*.{fastq,fq}.gz
interleave
:boolean
Indicates whether the input paired reads are interleaved or not
repaired
*_repaired.fastq.gz
re-paired reads
singleton
${prefix}_singleton.fastq.gz
singleton reads
*singleton.fastq.gz
log
*.log
log file containing stdout and stderr from repair.sh
versions_bbmap
${task.process}
:string
The name of the process
bbmap
The name of the tool
bbversion.sh | grep -v "Duplicate cpuset"
:eval
The expression to obtain the version of the tool
versions
Repair.sh is a tool that re-pairs reads that became disordered or had some mates eliminated tools.
