barrnap uses a hmmer profile to find rrnas in reads or contig fasta files
meta
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
fasta
:file
fasta file
*.fasta
dbname
:string
database to use(bacteria, archaea, eukaryota, metazoan mitochondria)
gff
*.gff
gff file containing coordinates of genes
versions_barrnap
${task.process}
The name of the process
barrnap
The name of the tool
barrnap --version 2>&1 | sed "s/barrnap //g"
:eval
The expression to obtain the version of the tool
versions
Barrnap predicts the location of ribosomal RNA genes in genomes (bacteria, archaea, metazoan mitochondria and eukaryotes).
