Aggregates fastq files with demultiplexed reads
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fastq_dir
:directory
Directory containing the fastq files with demultiplexed reads
*
fastq
*.fastq.gz
:file
Aggregated FastQ files
*.{fastq.gz}
versions_artic
${task.process}
:string
The name of the process
artic
The name of the tool
artic -v 2>&1 | sed "s/^.*artic //; s/ .*$//"
:eval
The expression to obtain the version of the tool
versions
ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore
