Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM/CRAM/SAM file
*.{bam,cram,sam}
bai
BAM index file
*.bai
fusions
Arriba fusions file
*.tsv
meta2
gtf
Annotation GTF file
*.gtf
meta3
protein_domains
Protein domain annotation files
*.gff3
meta4
cytobands
Coordinates of the Giemsa staining bands needed to draw ideograms
.tsv
pdf
*.pdf
File contains fusions visualisation
versions_arriba
${task.process}
:string
The name of the process
arriba
The name of the tool
arriba -h | grep "Version:" 2>&1 | sed "s/Version:\s//"
:eval
The expression to obtain the version of the tool
versions
Fast and accurate gene fusion detection from RNA-Seq data
