ALE: assembly likelihood estimator.
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
asm
:file
Assembly in FASTA format
*.{fasta,fa}
bam
BAM file containing sorted read mappings
*.{bam}
ale
*_ALEoutput.txt
Output TXT file containing ALE results
*_ALEoutput.{txt}
versions_ale
${task.process}
:string
The name of the process
ALE
The name of the tool
20180904
The expression to obtain the version of the tool
versions
ALE is a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.
